DETEKSI KEBERADAAN Phytophthora spp. DI AIR

Purnamila Sulistyawati

Abstract


The genus of Phytophthora is a destructive plants pathogen. However the existence of these species in plant tissue was hardly to detect because the fungus may also be present as resistant propagules in soil or spread through waterways. This study aimed to test the FTA card as a direct bait to obtain the DNA of  Phytophthora spp and also to investigate the suitability of FTA card as a sampling method. This research used several Phytophthora baits including FTA card followed by DNA extraction and PCR used ITS primers and genus/species specific primers. The result of the study showed that FTA card can be used as a direct bait for Phytophthora spp. and to sample fungal DNA from other Phytophthora baits. However, further optimisation and validation are still required.

Keywords


Phytophthora; FTA Card; Baits; PCR

Full Text:

PDF

References


Boyle, J.S., and Lew, A.M. (1995). An Inexpensive Alternative to Glassmilkfor DNA Purification. TIG 11.

Brasier, C., Denman, S., Brown, A., and Webber, J. (2004). Sudden Oak Death (Phytophthora ramorum) Discovered on Trees in Europe. Mycological Research 108, 1107 - 1110.

Britt, J., and Hansen, E. (2009). Trees, soils, streams and rain traps: Intensive sampling leads to recovery of multiple genotypes from hosts of Phytophthora ramorum in Oregon forests. (Portland, OR), pp. S16-S16.

Duran, A., Gryzenhout, M., Slippers, B., Ahumada, R., Rotella, A., Flores, F., Wingfield, B.D., and Wingfield, M.J. (2008). Phytophthora pinifolia sp. nov. Associated with a Serious Needle Disease of Pinus radiata in Chile. Plant Pathology 57, 715-727.

Ferguson, A.J., and Jeffers, S.N. (1999). Detecting Multiple Species of Phytophthora in Container Mixes from Ornamental Crop Nurseries. Plant Disease 83, 129-1136.

Gardes, M., and Bruns, T.D. (1993). ITS Primers With Enhanced Specificity for Basidiomycetes - Applications to The Identification of Mychorriza and Rusts. Molecular Ecology, pg. 113-118.

Gevens, A.J., Donahoo, R.S., Lamour, K.H., and Hausbeck, M.K. (2007). Characterization of Phytophthora capsici from Michigan Surface Irrigation Water. Phytopatology Vol 97, 421-428.

Ghimire, S.R., Richardson, P.A., Moorman, G.W., Lea-Cox, J.D., Ross, D.S., and Hong, C. (2006). Detection of Phytophthora species in a run-off water retention basin at a commercial nursery in plant hardiness zones 7b of Virginia in winter. Phytopathology 96, S40-S40.

Ghimire, S.R., Richardson, P.A., Moorman, G.W., Lea-Cox, J.D., Ross, D.S., and Hong, C.X. (2009). An in-situ baiting bioassay for detecting Phytophthora species in irrigation runoff containment basins. Plant Pathology 58, 577-583.

Glen, M., Tommerup, I.C., Bougher, N.L., and O’Brien, P.A. (2002). Are Sebacinaceae Common and Widespread Ectomychorrizal Associates of Eucalyptus Species in Australian Forests? Mychorriza 12, 243-247.

Hong, C.X., Gallegly, M.E., Richardson, P.A., Kong, P., and Moorman, G.W. (2008). Phytophthora irrigata, a new species isolated from irrigation reservoirs and rivers in Eastern United States of America. Fems Microbiology Letters 285, 203-211.

Jeffers, S.N., and Martin, S.B. (1986). Comparison of Two Media Selective for and Phytium Species. Plant Disease 70, 1038-1043.

O’Brien, P.A. (2008). PCR Primers for Specific Detection of Phytophthora cinnamomi. Australasian Plant Pathology 37, 69-71.

Raeder, U., and Broda, P. (1985). Rapid Preparation of DNA from Filamentous Fungi. Letters in Applied Microbiology, 17-20.

Ristaino, J.B., and Gumpertz, M.L. (2000). New Frontiers in The Study of Dispersal and Spatial Analysis of Epidemics Caused by Species In The Genus Phytophthora. Annual Review of Phytopathology 38, 541-576.

Rogers, C., and Burgoyne, L. (1997). Bacterial Typing: Storing and Processing of Stabilized Reference Bacteria for PCR Without Preparing DNA-An Example of An Automated Procedure. Analytical Biochemistry 247.

Schena, L., Duncan, J.M., and Cooke, D.E.L. (2008). Development and Application of a PCR-based ‘Molecular Tool Box’ for The Identification of Phytophthora species Damaging Forests and Natural Ecosystems Plant Pathology 57, 64-75.

Schena, L., Hughes, K.J.D., and Cooke, D.E.L. (2006). Detection and Quantification of Phytophthora ramorum , P. kernoviae , P. citricola and P. quercina in Symptomatic Leaves by Multiplex Real-time PCR. Molecular Plant Pathology 7, 365-379.

Sechler, K.E., Carras, M.M., Shishkoff, N., and Tooley, P.W. (2009). Detection limit of Phytophthora ramorum-infected Rhododendron leaves using the Cepheid SmartCycler. (Portland, OR), pp. S205-S205.

Steddom, K. (2009). Detecting Phytophthora in recycled nursery irrigation water in East Texas. (Portland, OR), pp. S124-S124.

Suzuki, S., Taketani, H., Kusumoto, K.I., and Kashiwagi, Y. (2006). Highthroughput Genotyping of Filamentous Fungus Aspergillus oryzae Based on Colony Direct Polymerase Chain Reaction. Journal of Bioscience and Bioengineering 102, 572-574.

Tsao, P.H. (1970). Selective Media for Isolation of Pathogenic Fungi. Annual Review of Phytopathology 8, 157-186.

Tyler, B.M. (2002). Molecular Basis of Rcognition Between Phytophthora Pathogens and Their Hosts. Annual Review of Phytopathology 40, 137-167.

Tyler, B.M., Tripathy, S., Zhang, X., Dehal, P., Jiang, R.H.Y., Aerts, A., Arredondo, F.D., Baxter, L., Bensasson, D., Beynon, J.L., et al. (2006). Phytophthora G e n o m e S e q u e n c e s U n c o v e r Evolutionary Origins and Mechanisms of Pathogenesis. Science 313, pg. 1261-

White, T.J., Bruns, T.D., Lee, S., and Taylor, J. (1990). Analysis of Phylogenetic Relationships by Amplification and Direct Sequencing of Ribosomal RNA Genes. PCR Protocols: A Guide to Methods and Applications (New York: Academic Press).




DOI: https://doi.org/10.20886/jpth.2014.8.3.199-212

Refbacks

  • There are currently no refbacks.




Copyright (c) 2019 Jurnal Pemuliaan Tanaman Hutan

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

Jurnal Pemuliaan Tanaman Hutan Indexed By:

 

Copyright of Jurnal Pemuliaan Tanaman Hutan (JPTH)

eISSN : 2527-8665   pISSN : 1693-7147

48