PENGEMBANGAN PENANDA MIKROSATELIT PADA Pinus merkusii MENGGUNAKAN METODE DUAL SUPRESSION DAN SCREENING PENANDA

ILG Nurtjahjaningsih

Abstract


Aims of this study were to develop and characterize microsatellite markers from three species of Pinus i.e P. densiflora, P. Pinaster and P. Taeda were screened to amplify microsatellite in P. merkusii. The results showed that 5 out of the 12 developed microsatellite markers by dual suppression amplified at a single polymorphic locus; otherwise there was no polymorphic locus of the 12 screened microsatellite markers. However, it is difficult to compare the efficiency of these two method because of the limited number of the screened primers used in this study.


Keywords


Pinus merkusii, microsatellite, dual suppression, primer screening

Full Text:

PDF

References


Chaix, G., Gerber, S., Razafimaharo, V. and Vigneron, P. 2003. Gene flow estimation with microsatellite in a Malagasy seed orchard of Eucalyptus grandis. Theorectical and Applied Genetics 107: 705-712

Changtragoon, S. and Finkeldey, R. 1995. Pattern of genetic variation and characterization of the mating system of Pinus merkusii in Thailand. Forest Genetics, 2(2), 87-97.

Cooling, E.N. 1968. Fast growing timber tree of the lowland tropics. No.4.CFI. Pinus merkusii Commonwealth Forestry Institute. Department of Forestry, University of Oxford. 169p.

Echt, C.S., Vendramin, G.G., Nelson, C.D., Marquardt, P. 1999. Microsatellite DNA as shared genetic markers among conifer spesies. Can. J. For. Res. 29: 365-371.

Elsik, C.G., Minihan, V.T., Hall S.E., Scarpa, A.M. and Williams, C.G. 2000. Low-copy microsallelite markers for Pinus taeda L. Genome 43: 550-555.

Fisher, P.J., Richardson, T.E. and Gardner R.C. 1998. Characteristic of single and multicopy microsatellite from Pinus radiate. Theor . Appl. Genet. 96: 969-979.

Hicks, M., Adams, D., O’Keefe, S., Macdonald, E., Hodgetts, R. 1998. The development of RAPD and microsatellite markers in lodge pole pine (Pinus contorta var. latifolia). Genome 41: 797-805

Islam, M.S., Lian, C., Kameyama, N., Wus, B. and Hogetsu, T. 2004. Development of microsatellite markers in Rizhophora stylosa using a dual-suppression-polymerase chain reaction technique. Molecular Ecology Notes 4: 110-112.

Kinlaw, Claire and Neale, David B. 1997. Complex gene families in pine genomes. Trends in plant science perspectives 2 (9): 356-359

Lian, C., Miwa, M. and Hogetsu, T. 2000. Isolation and characterization of microsatellite loci from the Japanese red pine, Pinus densiflora. Molecular Ecology Primer Notes 9: 1171-1193.

Mariette, S., Chagne, D., Decroocq, S., Vendramin, G.G., Lalanne, C., Madur, D. and Plomion, C. 2001. Microsatellite markers for Pinus pinaster Ait. Ann. For. Sci. 58: 203-206.

Moriguchi, Y., Iwata, H., Ujino-lhara, T., Yoshimura, K., Taira, H. and Tsumura, Y., 2003. Development and characterization of microsatellite markers for Cryptomeria japonica D.Don. Theor. Appl. Genet. 106: 751-758.

Nagai, S., Lian, C., Hamaguchi, M., Matsuyama, Y., Itakur, S. and Hogetsu, T. 2004. Development of microsatellite markers in the toxic dinoflagellate Alexandrium tamarense (Dinophyceae). Moleculer Ecology Notes 4: 83-85.

Nurtjahjaningsi, I.L.G., Saito, Y., Lian, C.L., Tsuda, Y., Ide, Y. 2005. Development and characteristics of microsatellite markers in Pinus merkusii. Molecular Ecology Notes 5: 552-553.

Price, R.A. 1989. The genera of Pinaceae in the southeastern United States. J. Arnold arbor 70: 247-305

Saito, Y., Lian, L., Hogetsu, T., Ide, Y. 2005. Development and characterization of microsatellite markrs in Abies firma and interspecific amplification in oher Japanese Abies species. Moleculer Ecology Primer Notes 5: 234-235

Siregar, I.Z, and Hattermer, H.H. 2004. Patterns of genetic structure and variation of Merkus pine (Pinus merkusii) in Indonesia. Journal of Tropical Forest Science 16 (2): 160-172

Soranzo, N., Provan, J. and Powell, W. 1998. Characterization of microsatellite loci in Pinus L. Molecular Ecology Primer Notes 7: 1247-1263

Tsuda, Y and Ide, Y. 2005. Wide- range analysis of genetic structure of Betula maximo-wicziana, a long-lived pioneer tree species and noble hardwood in the cool temperate zone of Japan. Moleculer Ecology 14 : 3929-3941

Watanabe, A., Iwaizumi, M.G., Ubukata, M, Kondo, ., Lian C., Hogetsu, T, 2006. Isolation of microsatellite markers from Pinus densiflora Sieb.et Zucc. Using a dual PCR technique. Moleculer Ecology Notes 6: 80-82

Zhou Z., Miwa M., Hogetsu T (1999) Analysis of genetic structure of Suillus grevillei population in a Larix kaempferi stand by polymorphism of inter-simple sequence repeat (ISSR). New Phytologist 144: 55-63.




DOI: https://doi.org/10.20886/jpth.2010.4.1.25-35

Refbacks

  • There are currently no refbacks.




Copyright (c) 2019 Jurnal Pemuliaan Tanaman Hutan

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

Jurnal Pemuliaan Tanaman Hutan Indexed By:

 

Copyright of Jurnal Pemuliaan Tanaman Hutan (JPTH)

eISSN : 2527-8665   pISSN : 1693-7147

48